Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_dts-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_dts-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_dts-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_dts-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 70419581 total, 60917 skipped (flags/unmapped)
Fragments: 35272265 total (35045213 tlen-paired, 3392 hash-paired, 461 singletons, 15426 discordant, 207773 orphans, 11184 too large [>5000 bp], 12607518 duplicates)
Reads: 75406020 total, 51234 skipped (flags/unmapped)
Fragments: 37772377 total (37519744 tlen-paired, 6629 hash-paired, 329 singletons, 13604 discordant, 232071 orphans, 21216 too large [>5000 bp], 13589231 duplicates)
Reads: 83098092 total, 84385 skipped (flags/unmapped)
Fragments: 41669493 total (41166857 tlen-paired, 5206 hash-paired, 376 singletons, 92271 discordant, 404783 orphans, 39940 too large [>5000 bp], 14995908 duplicates)
Reads: 76837657 total, 45973 skipped (flags/unmapped)
Fragments: 38489221 total (38269316 tlen-paired, 2458 hash-paired, 425 singletons, 10599 discordant, 206423 orphans, 10045 too large [>5000 bp], 13512896 duplicates)