Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_1D3-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1D3-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1D3-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1D3-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 69665621 total, 48412 skipped (flags/unmapped)
Fragments: 34902429 total (34677630 tlen-paired, 3249 hash-paired, 351 singletons, 12721 discordant, 208478 orphans, 10590 too large [>5000 bp], 12908910 duplicates)
Reads: 75699087 total, 40126 skipped (flags/unmapped)
Fragments: 37926838 total (37703899 tlen-paired, 2596 hash-paired, 357 singletons, 8956 discordant, 211030 orphans, 8336 too large [>5000 bp], 13725320 duplicates)
Reads: 74818977 total, 42898 skipped (flags/unmapped)
Fragments: 37492844 total (37228401 tlen-paired, 3217 hash-paired, 296 singletons, 12167 discordant, 248763 orphans, 19725 too large [>5000 bp], 13937158 duplicates)
Reads: 82434718 total, 68888 skipped (flags/unmapped)
Fragments: 41361235 total (40802269 tlen-paired, 3333 hash-paired, 343 singletons, 106541 discordant, 448749 orphans, 46226 too large [>5000 bp], 15418940 duplicates)