Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BH4B-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BH4B-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BH4B-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BH4B-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 80880565 total, 50759 skipped (flags/unmapped)
Fragments: 40537836 total (40256114 tlen-paired, 3172 hash-paired, 445 singletons, 11050 discordant, 267055 orphans, 10817 too large [>5000 bp], 15866026 duplicates)
Reads: 75384277 total, 57489 skipped (flags/unmapped)
Fragments: 37780706 total (37504067 tlen-paired, 3817 hash-paired, 413 singletons, 15128 discordant, 257281 orphans, 11535 too large [>5000 bp], 15060310 duplicates)
Reads: 80684158 total, 55696 skipped (flags/unmapped)
Fragments: 40440305 total (40125738 tlen-paired, 3643 hash-paired, 278 singletons, 13140 discordant, 297506 orphans, 22818 too large [>5000 bp], 16154587 duplicates)
Reads: 88976387 total, 83279 skipped (flags/unmapped)
Fragments: 44676439 total (43958274 tlen-paired, 2688 hash-paired, 388 singletons, 137837 discordant, 577252 orphans, 58935 too large [>5000 bp], 17877716 duplicates)