Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_3O4-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3O4-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3O4-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3O4-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 58066153 total, 44399 skipped (flags/unmapped)
Fragments: 29105226 total (28884618 tlen-paired, 2725 hash-paired, 251 singletons, 9859 discordant, 207773 orphans, 9663 too large [>5000 bp], 10739429 duplicates)
Reads: 61895343 total, 35646 skipped (flags/unmapped)
Fragments: 31029216 total (30805450 tlen-paired, 2371 hash-paired, 364 singletons, 7250 discordant, 213781 orphans, 7705 too large [>5000 bp], 11210735 duplicates)
Reads: 68934941 total, 61287 skipped (flags/unmapped)
Fragments: 34639873 total (34005920 tlen-paired, 1897 hash-paired, 292 singletons, 121612 discordant, 510152 orphans, 52176 too large [>5000 bp], 12818586 duplicates)
Reads: 68604158 total, 39897 skipped (flags/unmapped)
Fragments: 34396056 total (34123572 tlen-paired, 4202 hash-paired, 248 singletons, 10053 discordant, 257981 orphans, 15189 too large [>5000 bp], 12724249 duplicates)