Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_3Y1-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_3Y1-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3Y1-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3Y1-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 74349652 total, 58858 skipped (flags/unmapped)
Fragments: 37277300 total (36966971 tlen-paired, 3158 hash-paired, 379 singletons, 16297 discordant, 290495 orphans, 13534 too large [>5000 bp], 15465005 duplicates)
Reads: 79722315 total, 49185 skipped (flags/unmapped)
Fragments: 39975501 total (39662548 tlen-paired, 2589 hash-paired, 436 singletons, 10862 discordant, 299066 orphans, 10815 too large [>5000 bp], 16360385 duplicates)
Reads: 87744341 total, 85124 skipped (flags/unmapped)
Fragments: 44102878 total (43261998 tlen-paired, 2166 hash-paired, 402 singletons, 159577 discordant, 678735 orphans, 66299 too large [>5000 bp], 18448071 duplicates)
Reads: 87410930 total, 54421 skipped (flags/unmapped)
Fragments: 43835759 total (43461285 tlen-paired, 4229 hash-paired, 350 singletons, 16452 discordant, 353443 orphans, 19392 too large [>5000 bp], 18346356 duplicates)