Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_cuO-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_cuO-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 659_cuO-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.baiThe index file is older than the data file: 659_cuO-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai

Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 74153093 total, 56316 skipped (flags/unmapped)
Fragments: 37146092 total (36918152 tlen-paired, 2853 hash-paired, 380 singletons, 12486 discordant, 212221 orphans, 8597 too large [>5000 bp], 13735839 duplicates)
Reads: 79764488 total, 49270 skipped (flags/unmapped)
Fragments: 39955400 total (39730280 tlen-paired, 3275 hash-paired, 427 singletons, 8269 discordant, 213149 orphans, 8997 too large [>5000 bp], 14574205 duplicates)
Reads: 87462236 total, 54775 skipped (flags/unmapped)
Fragments: 43812578 total (43526670 tlen-paired, 5599 hash-paired, 370 singletons, 12536 discordant, 267403 orphans, 25039 too large [>5000 bp], 16320303 duplicates)
Reads: 88130072 total, 81394 skipped (flags/unmapped)
Fragments: 44213649 total (43628587 tlen-paired, 3051 hash-paired, 361 singletons, 109311 discordant, 472339 orphans, 47040 too large [>5000 bp], 16523420 duplicates)