Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_1BK-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_1BK-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_1BK-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_1BK-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 86881304 total, 46947 skipped (flags/unmapped)
Fragments: 43561044 total (43238383 tlen-paired, 2446 hash-paired, 478 singletons, 10186 discordant, 309551 orphans, 11149 too large [>5000 bp], 17655041 duplicates)
Reads: 81122850 total, 55617 skipped (flags/unmapped)
Fragments: 40673850 total (40353843 tlen-paired, 3048 hash-paired, 363 singletons, 15520 discordant, 301076 orphans, 10486 too large [>5000 bp], 16819828 duplicates)
Reads: 96319254 total, 75518 skipped (flags/unmapped)
Fragments: 48416279 total (47504325 tlen-paired, 3001 hash-paired, 382 singletons, 174645 discordant, 733926 orphans, 72743 too large [>5000 bp], 20050062 duplicates)
Reads: 95762100 total, 54437 skipped (flags/unmapped)
Fragments: 48022696 total (47628008 tlen-paired, 3507 hash-paired, 362 singletons, 15420 discordant, 375399 orphans, 19016 too large [>5000 bp], 19907478 duplicates)