Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_4S7-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4S7-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4S7-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4S7-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 74194677 total, 48286 skipped (flags/unmapped)
Fragments: 37191706 total (36920180 tlen-paired, 3077 hash-paired, 323 singletons, 13478 discordant, 254648 orphans, 8975 too large [>5000 bp], 15103689 duplicates)
Reads: 79270091 total, 41892 skipped (flags/unmapped)
Fragments: 39733500 total (39462554 tlen-paired, 2959 hash-paired, 409 singletons, 9426 discordant, 258152 orphans, 9880 too large [>5000 bp], 15781349 duplicates)
Reads: 88494344 total, 73144 skipped (flags/unmapped)
Fragments: 44444347 total (43710476 tlen-paired, 4363 hash-paired, 331 singletons, 140142 discordant, 589035 orphans, 60936 too large [>5000 bp], 18147830 duplicates)
Reads: 87570600 total, 46646 skipped (flags/unmapped)
Fragments: 43898472 total (43555197 tlen-paired, 6589 hash-paired, 347 singletons, 14114 discordant, 322225 orphans, 24791 too large [>5000 bp], 17910617 duplicates)