Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_D5N-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_D5N-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_D5N-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_D5N-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 68454263 total, 35334 skipped (flags/unmapped)
Fragments: 34295636 total (34096668 tlen-paired, 1713 hash-paired, 354 singletons, 8680 discordant, 188221 orphans, 8116 too large [>5000 bp], 12249909 duplicates)
Reads: 63233105 total, 43885 skipped (flags/unmapped)
Fragments: 31679190 total (31476736 tlen-paired, 2664 hash-paired, 307 singletons, 13112 discordant, 186371 orphans, 8759 too large [>5000 bp], 11603742 duplicates)
Reads: 68090806 total, 38966 skipped (flags/unmapped)
Fragments: 34119187 total (33880928 tlen-paired, 2331 hash-paired, 232 singletons, 11386 discordant, 224310 orphans, 19004 too large [>5000 bp], 12527608 duplicates)
Reads: 74876221 total, 58305 skipped (flags/unmapped)
Fragments: 37564323 total (37084994 tlen-paired, 2339 hash-paired, 347 singletons, 89598 discordant, 387045 orphans, 38331 too large [>5000 bp], 13866056 duplicates)