Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1173_JXL-N1-BDNA-01_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1173_JXL-N1-BDNA-01_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1173_JXL-N1-BDNA-01_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1173_JXL-N1-BDNA-01_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 77206733 total, 59451 skipped (flags/unmapped)
Fragments: 38755414 total (38351949 tlen-paired, 3896 hash-paired, 424 singletons, 11323 discordant, 387822 orphans, 12350 too large [>5000 bp], 17233435 duplicates)
Reads: 82823309 total, 54798 skipped (flags/unmapped)
Fragments: 41587921 total (41122874 tlen-paired, 4286 hash-paired, 337 singletons, 10222 discordant, 450202 orphans, 21604 too large [>5000 bp], 18474954 duplicates)
Reads: 82665928 total, 51929 skipped (flags/unmapped)
Fragments: 41505471 total (41079222 tlen-paired, 3012 hash-paired, 601 singletons, 8120 discordant, 414516 orphans, 9087 too large [>5000 bp], 17960731 duplicates)
Reads: 92125158 total, 91763 skipped (flags/unmapped)
Fragments: 46431695 total (45107974 tlen-paired, 3414 hash-paired, 413 singletons, 268794 discordant, 1051100 orphans, 110759 too large [>5000 bp], 20517422 duplicates)