Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_dHy-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_dHy-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_dHy-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_dHy-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 85755687 total, 61734 skipped (flags/unmapped)
Fragments: 42976768 total (42669531 tlen-paired, 3915 hash-paired, 383 singletons, 16431 discordant, 286508 orphans, 13654 too large [>5000 bp], 17809506 duplicates)
Reads: 91420691 total, 50229 skipped (flags/unmapped)
Fragments: 45817816 total (45515406 tlen-paired, 3235 hash-paired, 464 singletons, 11155 discordant, 287556 orphans, 11425 too large [>5000 bp], 18587128 duplicates)
Reads: 100838859 total, 55106 skipped (flags/unmapped)
Fragments: 50543520 total (50169566 tlen-paired, 3582 hash-paired, 377 singletons, 17071 discordant, 352924 orphans, 25007 too large [>5000 bp], 21054069 duplicates)
Reads: 101866384 total, 84832 skipped (flags/unmapped)
Fragments: 51146748 total (50344724 tlen-paired, 3258 hash-paired, 387 singletons, 151244 discordant, 647135 orphans, 67789 too large [>5000 bp], 21331372 duplicates)