Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_5JK-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5JK-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5JK-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5JK-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 105285798 total, 77050 skipped (flags/unmapped)
Fragments: 52786232 total (52363416 tlen-paired, 5591 hash-paired, 584 singletons, 23795 discordant, 392846 orphans, 14857 too large [>5000 bp], 21993238 duplicates)
Reads: 113315956 total, 63780 skipped (flags/unmapped)
Fragments: 56811239 total (56387422 tlen-paired, 4255 hash-paired, 694 singletons, 16950 discordant, 401918 orphans, 16155 too large [>5000 bp], 23222709 duplicates)
Reads: 112912974 total, 66943 skipped (flags/unmapped)
Fragments: 56617498 total (56136224 tlen-paired, 4316 hash-paired, 453 singletons, 20275 discordant, 456230 orphans, 33859 too large [>5000 bp], 23712861 duplicates)
Reads: 124809564 total, 104572 skipped (flags/unmapped)
Fragments: 62701200 total (61618285 tlen-paired, 3726 hash-paired, 491 singletons, 208257 discordant, 870441 orphans, 86762 too large [>5000 bp], 26281182 duplicates)