Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_4PJ-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4PJ-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4PJ-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4PJ-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 72663631 total, 50181 skipped (flags/unmapped)
Fragments: 36434340 total (36142659 tlen-paired, 3114 hash-paired, 373 singletons, 13023 discordant, 275171 orphans, 10157 too large [>5000 bp], 14832694 duplicates)
Reads: 78162634 total, 46820 skipped (flags/unmapped)
Fragments: 39192666 total (38888234 tlen-paired, 3209 hash-paired, 436 singletons, 9659 discordant, 291128 orphans, 11023 too large [>5000 bp], 15547074 duplicates)
Reads: 77576703 total, 46275 skipped (flags/unmapped)
Fragments: 38904578 total (38572765 tlen-paired, 4181 hash-paired, 346 singletons, 11360 discordant, 315926 orphans, 18772 too large [>5000 bp], 15845602 duplicates)
Reads: 85786861 total, 70744 skipped (flags/unmapped)
Fragments: 43125729 total (42288677 tlen-paired, 2633 hash-paired, 361 singletons, 164396 discordant, 669662 orphans, 67341 too large [>5000 bp], 17591326 duplicates)