Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_1XX-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_1XX-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_1XX-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_1XX-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 64127199 total, 44378 skipped (flags/unmapped)
Fragments: 32123730 total (31929568 tlen-paired, 2777 hash-paired, 280 singletons, 11484 discordant, 179621 orphans, 7631 too large [>5000 bp], 10495114 duplicates)
Reads: 68485676 total, 36438 skipped (flags/unmapped)
Fragments: 34307333 total (34117714 tlen-paired, 1612 hash-paired, 329 singletons, 8115 discordant, 179563 orphans, 7232 too large [>5000 bp], 11030302 duplicates)
Reads: 75060054 total, 42268 skipped (flags/unmapped)
Fragments: 37603244 total (37361343 tlen-paired, 4107 hash-paired, 250 singletons, 12210 discordant, 225334 orphans, 18441 too large [>5000 bp], 12345010 duplicates)
Reads: 75425556 total, 65112 skipped (flags/unmapped)
Fragments: 37834095 total (37363566 tlen-paired, 2470 hash-paired, 262 singletons, 86261 discordant, 381536 orphans, 37026 too large [>5000 bp], 12442908 duplicates)