Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_4ET-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4ET-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4ET-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4ET-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 64566698 total, 47973 skipped (flags/unmapped)
Fragments: 32343435 total (32139071 tlen-paired, 3111 hash-paired, 309 singletons, 11838 discordant, 189106 orphans, 10635 too large [>5000 bp], 11406856 duplicates)
Reads: 69951998 total, 38836 skipped (flags/unmapped)
Fragments: 35043317 total (34840536 tlen-paired, 2406 hash-paired, 363 singletons, 8447 discordant, 191565 orphans, 9228 too large [>5000 bp], 12186286 duplicates)
Reads: 75958285 total, 62496 skipped (flags/unmapped)
Fragments: 38113876 total (37606215 tlen-paired, 2177 hash-paired, 250 singletons, 93159 discordant, 412075 orphans, 40181 too large [>5000 bp], 13596052 duplicates)
Reads: 75863816 total, 42036 skipped (flags/unmapped)
Fragments: 38010699 total (37754495 tlen-paired, 3896 hash-paired, 295 singletons, 12352 discordant, 239661 orphans, 20169 too large [>5000 bp], 13504638 duplicates)