Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_5QA-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_5QA-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.baiThe index file is older than the data file: 1136_5QA-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1136_5QA-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 69277106 total, 56554 skipped (flags/unmapped)
Fragments: 34743285 total (34440045 tlen-paired, 3427 hash-paired, 356 singletons, 13551 discordant, 285906 orphans, 10122 too large [>5000 bp], 13579645 duplicates)
Reads: 75373008 total, 47439 skipped (flags/unmapped)
Fragments: 37800296 total (37489179 tlen-paired, 3321 hash-paired, 432 singletons, 10315 discordant, 297049 orphans, 11229 too large [>5000 bp], 14414932 duplicates)
Reads: 74631365 total, 51373 skipped (flags/unmapped)
Fragments: 37432683 total (37079128 tlen-paired, 6000 hash-paired, 306 singletons, 12677 discordant, 334572 orphans, 24752 too large [>5000 bp], 14650072 duplicates)
Reads: 82523493 total, 73816 skipped (flags/unmapped)
Fragments: 41496900 total (40644417 tlen-paired, 2316 hash-paired, 338 singletons, 167340 discordant, 682489 orphans, 69352 too large [>5000 bp], 16207023 duplicates)