Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 659_bQZ-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.baiThe index file is older than the data file: 659_bQZ-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 659_bQZ-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_bQZ-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 118773912 total, 88295 skipped (flags/unmapped)
Fragments: 59516627 total (59111234 tlen-paired, 4841 hash-paired, 613 singletons, 21829 discordant, 378110 orphans, 15543 too large [>5000 bp], 25928497 duplicates)
Reads: 126844064 total, 71764 skipped (flags/unmapped)
Fragments: 63562920 total (63156851 tlen-paired, 4442 hash-paired, 594 singletons, 15101 discordant, 385932 orphans, 16493 too large [>5000 bp], 27300933 duplicates)
Reads: 140402744 total, 113578 skipped (flags/unmapped)
Fragments: 70491194 total (69424631 tlen-paired, 3852 hash-paired, 602 singletons, 199515 discordant, 862594 orphans, 84987 too large [>5000 bp], 30952706 duplicates)
Reads: 139251954 total, 79192 skipped (flags/unmapped)
Fragments: 69791965 total (69294641 tlen-paired, 6160 hash-paired, 524 singletons, 22040 discordant, 468600 orphans, 28978 too large [>5000 bp], 30592759 duplicates)