Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_4GR-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4GR-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4GR-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4GR-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 77191431 total, 54733 skipped (flags/unmapped)
Fragments: 38674247 total (38428383 tlen-paired, 3531 hash-paired, 314 singletons, 11893 discordant, 230126 orphans, 9322 too large [>5000 bp], 15045780 duplicates)
Reads: 83227393 total, 45609 skipped (flags/unmapped)
Fragments: 41698878 total (41449461 tlen-paired, 3318 hash-paired, 427 singletons, 8385 discordant, 237287 orphans, 10871 too large [>5000 bp], 15869644 duplicates)
Reads: 82795617 total, 48794 skipped (flags/unmapped)
Fragments: 41488373 total (41193780 tlen-paired, 5354 hash-paired, 308 singletons, 10638 discordant, 278293 orphans, 24339 too large [>5000 bp], 16250057 duplicates)
Reads: 91563747 total, 78628 skipped (flags/unmapped)
Fragments: 45952733 total (45287084 tlen-paired, 3405 hash-paired, 333 singletons, 129437 discordant, 532474 orphans, 56230 too large [>5000 bp], 18027144 duplicates)