Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_FVW-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_FVW-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_FVW-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_FVW-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 80342024 total, 59663 skipped (flags/unmapped)
Fragments: 40266949 total (39974284 tlen-paired, 3674 hash-paired, 428 singletons, 12528 discordant, 276035 orphans, 12463 too large [>5000 bp], 16167646 duplicates)
Reads: 87254902 total, 47829 skipped (flags/unmapped)
Fragments: 43737957 total (43433718 tlen-paired, 3025 hash-paired, 534 singletons, 9027 discordant, 291653 orphans, 11673 too large [>5000 bp], 17169537 duplicates)
Reads: 86308940 total, 50077 skipped (flags/unmapped)
Fragments: 43271384 total (42933649 tlen-paired, 3512 hash-paired, 358 singletons, 10876 discordant, 322989 orphans, 19721 too large [>5000 bp], 17450956 duplicates)
Reads: 95573265 total, 80029 skipped (flags/unmapped)
Fragments: 48013830 total (47174465 tlen-paired, 3086 hash-paired, 389 singletons, 164749 discordant, 671141 orphans, 68553 too large [>5000 bp], 19334209 duplicates)