Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_GF2-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.baiThe index file is older than the data file: 1029_GF2-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai

The index file is older than the data file: 1029_GF2-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_GF2-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 93631464 total, 62163 skipped (flags/unmapped)
Fragments: 46914417 total (46613472 tlen-paired, 3895 hash-paired, 450 singletons, 18173 discordant, 278427 orphans, 9672 too large [>5000 bp], 19143587 duplicates)
Reads: 101147957 total, 53324 skipped (flags/unmapped)
Fragments: 50676927 total (50377476 tlen-paired, 4085 hash-paired, 496 singletons, 12885 discordant, 281985 orphans, 11630 too large [>5000 bp], 20239989 duplicates)
Reads: 100566917 total, 56912 skipped (flags/unmapped)
Fragments: 50388226 total (50067015 tlen-paired, 3477 hash-paired, 400 singletons, 15341 discordant, 301993 orphans, 17973 too large [>5000 bp], 20632128 duplicates)
Reads: 110477676 total, 90731 skipped (flags/unmapped)
Fragments: 55430147 total (54697122 tlen-paired, 4153 hash-paired, 438 singletons, 137457 discordant, 590977 orphans, 59033 too large [>5000 bp], 22764188 duplicates)