Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BCAN-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BCAN-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BCAN-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BCAN-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 62255527 total, 44424 skipped (flags/unmapped)
Fragments: 31194175 total (30986073 tlen-paired, 2820 hash-paired, 305 singletons, 11685 discordant, 193292 orphans, 8175 too large [>5000 bp], 10800953 duplicates)
Reads: 66954855 total, 39722 skipped (flags/unmapped)
Fragments: 33550269 total (33312295 tlen-paired, 4069 hash-paired, 237 singletons, 10922 discordant, 222746 orphans, 18789 too large [>5000 bp], 11668723 duplicates)
Reads: 67267444 total, 36486 skipped (flags/unmapped)
Fragments: 33705025 total (33500308 tlen-paired, 1648 hash-paired, 369 singletons, 8553 discordant, 194147 orphans, 7712 too large [>5000 bp], 11386323 duplicates)
Reads: 73695744 total, 59758 skipped (flags/unmapped)
Fragments: 36983421 total (36470346 tlen-paired, 2307 hash-paired, 331 singletons, 97444 discordant, 412993 orphans, 41234 too large [>5000 bp], 12890707 duplicates)