Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_55O-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_55O-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_55O-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_55O-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 78794317 total, 58978 skipped (flags/unmapped)
Fragments: 39498450 total (39189852 tlen-paired, 4424 hash-paired, 344 singletons, 15619 discordant, 288211 orphans, 13497 too large [>5000 bp], 16177738 duplicates)
Reads: 92283364 total, 51436 skipped (flags/unmapped)
Fragments: 46271594 total (45913032 tlen-paired, 3036 hash-paired, 371 singletons, 15842 discordant, 339313 orphans, 14212 too large [>5000 bp], 19031473 duplicates)
Reads: 84593042 total, 46641 skipped (flags/unmapped)
Fragments: 42409177 total (42099381 tlen-paired, 2796 hash-paired, 430 singletons, 11071 discordant, 295499 orphans, 11988 too large [>5000 bp], 17007833 duplicates)
Reads: 93018466 total, 78231 skipped (flags/unmapped)
Fragments: 46741966 total (45907317 tlen-paired, 2361 hash-paired, 412 singletons, 157879 discordant, 673997 orphans, 65356 too large [>5000 bp], 19226574 duplicates)