Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1047_BP-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_BP-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_BP-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_BP-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 66736036 total, 54633 skipped (flags/unmapped)
Fragments: 33441102 total (33203049 tlen-paired, 3047 hash-paired, 379 singletons, 12945 discordant, 221682 orphans, 10630 too large [>5000 bp], 12866959 duplicates)
Reads: 71258886 total, 42069 skipped (flags/unmapped)
Fragments: 35710924 total (35477440 tlen-paired, 2085 hash-paired, 355 singletons, 8460 discordant, 222584 orphans, 8954 too large [>5000 bp], 13441595 duplicates)
Reads: 79776833 total, 69494 skipped (flags/unmapped)
Fragments: 40055743 total (39430246 tlen-paired, 2973 hash-paired, 340 singletons, 118583 discordant, 503601 orphans, 49897 too large [>5000 bp], 15469529 duplicates)
Reads: 78969539 total, 46422 skipped (flags/unmapped)
Fragments: 39581218 total (39306724 tlen-paired, 4571 hash-paired, 290 singletons, 12680 discordant, 256953 orphans, 8962 too large [>5000 bp], 15306740 duplicates)