Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_wQ-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_wQ-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_wQ-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_wQ-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 52423459 total, 38504 skipped (flags/unmapped)
Fragments: 26252899 total (26108851 tlen-paired, 2592 hash-paired, 273 singletons, 7867 discordant, 133316 orphans, 6373 too large [>5000 bp], 8184257 duplicates)
Reads: 55891749 total, 30348 skipped (flags/unmapped)
Fragments: 27992475 total (27851083 tlen-paired, 1814 hash-paired, 209 singletons, 5695 discordant, 133674 orphans, 5167 too large [>5000 bp], 8544514 duplicates)
Reads: 61725344 total, 51878 skipped (flags/unmapped)
Fragments: 30955258 total (30590498 tlen-paired, 1302 hash-paired, 215 singletons, 67272 discordant, 295971 orphans, 29568 too large [>5000 bp], 9738374 duplicates)
Reads: 61614678 total, 35752 skipped (flags/unmapped)
Fragments: 30859321 total (30681426 tlen-paired, 3747 hash-paired, 244 singletons, 8416 discordant, 165488 orphans, 13008 too large [>5000 bp], 9690851 duplicates)