Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_7GC-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.baiThe index file is older than the data file: 1136_7GC-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1136_7GC-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7GC-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 74062692 total, 48798 skipped (flags/unmapped)
Fragments: 37110513 total (36870000 tlen-paired, 3026 hash-paired, 380 singletons, 12957 discordant, 224150 orphans, 8699 too large [>5000 bp], 14295118 duplicates)
Reads: 79722239 total, 47238 skipped (flags/unmapped)
Fragments: 39945982 total (39695999 tlen-paired, 2437 hash-paired, 286 singletons, 10893 discordant, 236367 orphans, 9845 too large [>5000 bp], 15434609 duplicates)
Reads: 79839269 total, 42130 skipped (flags/unmapped)
Fragments: 40004776 total (39763107 tlen-paired, 1987 hash-paired, 410 singletons, 9315 discordant, 229957 orphans, 8977 too large [>5000 bp], 15005903 duplicates)
Reads: 88067204 total, 68078 skipped (flags/unmapped)
Fragments: 44200282 total (43575301 tlen-paired, 2593 hash-paired, 357 singletons, 120592 discordant, 501439 orphans, 50179 too large [>5000 bp], 17099680 duplicates)