Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_77V-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_77V-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_77V-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_77V-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 69904831 total, 49523 skipped (flags/unmapped)
Fragments: 35030341 total (34785952 tlen-paired, 3466 hash-paired, 275 singletons, 15619 discordant, 225029 orphans, 9965 too large [>5000 bp], 13303392 duplicates)
Reads: 75442985 total, 41890 skipped (flags/unmapped)
Fragments: 37804637 total (37566053 tlen-paired, 2545 hash-paired, 349 singletons, 11086 discordant, 224604 orphans, 8387 too large [>5000 bp], 14014094 duplicates)
Reads: 75229865 total, 45262 skipped (flags/unmapped)
Fragments: 37703401 total (37419717 tlen-paired, 3818 hash-paired, 322 singletons, 14009 discordant, 265535 orphans, 21829 too large [>5000 bp], 14376007 duplicates)
Reads: 82769604 total, 69625 skipped (flags/unmapped)
Fragments: 41533152 total (40963983 tlen-paired, 2610 hash-paired, 337 singletons, 107156 discordant, 459066 orphans, 46539 too large [>5000 bp], 15881717 duplicates)