Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_IUJ-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_IUJ-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_IUJ-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_IUJ-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 50528296 total, 39043 skipped (flags/unmapped)
Fragments: 25346292 total (25116743 tlen-paired, 2605 hash-paired, 261 singletons, 8241 discordant, 218442 orphans, 7686 too large [>5000 bp], 9658271 duplicates)
Reads: 54700766 total, 32414 skipped (flags/unmapped)
Fragments: 27441025 total (27206335 tlen-paired, 1976 hash-paired, 300 singletons, 5700 discordant, 226714 orphans, 6658 too large [>5000 bp], 10149770 duplicates)
Reads: 54767628 total, 36900 skipped (flags/unmapped)
Fragments: 27476403 total (27204284 tlen-paired, 2915 hash-paired, 230 singletons, 7760 discordant, 261214 orphans, 19683 too large [>5000 bp], 10478744 duplicates)
Reads: 60403248 total, 54309 skipped (flags/unmapped)
Fragments: 30393148 total (29692856 tlen-paired, 2809 hash-paired, 241 singletons, 140102 discordant, 557140 orphans, 60012 too large [>5000 bp], 11573930 duplicates)