Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_491-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_491-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_491-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_491-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 103569556 total, 73433 skipped (flags/unmapped)
Fragments: 51881510 total (51560389 tlen-paired, 3923 hash-paired, 522 singletons, 20847 discordant, 295829 orphans, 14727 too large [>5000 bp], 20742470 duplicates)
Reads: 110432321 total, 63875 skipped (flags/unmapped)
Fragments: 55328716 total (54949750 tlen-paired, 7300 hash-paired, 432 singletons, 17946 discordant, 353288 orphans, 32367 too large [>5000 bp], 22260211 duplicates)
Reads: 111723314 total, 57900 skipped (flags/unmapped)
Fragments: 55968927 total (55653893 tlen-paired, 2563 hash-paired, 507 singletons, 14585 discordant, 297379 orphans, 12723 too large [>5000 bp], 21963848 duplicates)
Reads: 121403993 total, 100982 skipped (flags/unmapped)
Fragments: 60893689 total (60149590 tlen-paired, 3612 hash-paired, 436 singletons, 137534 discordant, 602517 orphans, 59293 too large [>5000 bp], 24562825 duplicates)