Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_FZX-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_FZX-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_FZX-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_FZX-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 71915154 total, 52376 skipped (flags/unmapped)
Fragments: 36044809 total (35780942 tlen-paired, 3049 hash-paired, 415 singletons, 14636 discordant, 245767 orphans, 9671 too large [>5000 bp], 13432757 duplicates)
Reads: 76892553 total, 45699 skipped (flags/unmapped)
Fragments: 38543093 total (38241984 tlen-paired, 3542 hash-paired, 289 singletons, 13725 discordant, 283553 orphans, 22255 too large [>5000 bp], 14457047 duplicates)
Reads: 77285874 total, 41710 skipped (flags/unmapped)
Fragments: 38737403 total (38475300 tlen-paired, 2688 hash-paired, 432 singletons, 10909 discordant, 248074 orphans, 8932 too large [>5000 bp], 14169634 duplicates)
Reads: 84915177 total, 70442 skipped (flags/unmapped)
Fragments: 42634861 total (41971750 tlen-paired, 2486 hash-paired, 380 singletons, 127664 discordant, 532581 orphans, 53987 too large [>5000 bp], 16038736 duplicates)