Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_Kh-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_Kh-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_Kh-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_Kh-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 77094262 total, 59100 skipped (flags/unmapped)
Fragments: 38619731 total (38376176 tlen-paired, 3041 hash-paired, 421 singletons, 13564 discordant, 226529 orphans, 11325 too large [>5000 bp], 15098732 duplicates)
Reads: 83085702 total, 48396 skipped (flags/unmapped)
Fragments: 41622910 total (41381258 tlen-paired, 2254 hash-paired, 449 singletons, 9558 discordant, 229391 orphans, 10663 too large [>5000 bp], 15920049 duplicates)
Reads: 82653349 total, 53844 skipped (flags/unmapped)
Fragments: 41411296 total (41146995 tlen-paired, 3124 hash-paired, 307 singletons, 11530 discordant, 249340 orphans, 13280 too large [>5000 bp], 16289224 duplicates)
Reads: 91236752 total, 77754 skipped (flags/unmapped)
Fragments: 45776863 total (45157899 tlen-paired, 2868 hash-paired, 372 singletons, 118074 discordant, 497650 orphans, 51647 too large [>5000 bp], 18012963 duplicates)