Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_1X-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1X-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1X-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_1X-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 68977337 total, 46775 skipped (flags/unmapped)
Fragments: 34548340 total (34344830 tlen-paired, 2228 hash-paired, 337 singletons, 12890 discordant, 188055 orphans, 11137 too large [>5000 bp], 12437569 duplicates)
Reads: 73452739 total, 41195 skipped (flags/unmapped)
Fragments: 36796386 total (36559974 tlen-paired, 3437 hash-paired, 266 singletons, 11057 discordant, 221652 orphans, 20345 too large [>5000 bp], 13261180 duplicates)
Reads: 74391990 total, 38963 skipped (flags/unmapped)
Fragments: 37264691 total (37062270 tlen-paired, 2315 hash-paired, 354 singletons, 9083 discordant, 190669 orphans, 7334 too large [>5000 bp], 13100672 duplicates)
Reads: 80391983 total, 63391 skipped (flags/unmapped)
Fragments: 40319825 total (39843614 tlen-paired, 2432 hash-paired, 295 singletons, 87921 discordant, 385563 orphans, 37400 too large [>5000 bp], 14608873 duplicates)