Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1047_CO-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_CO-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_CO-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_CO-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 70735894 total, 42482 skipped (flags/unmapped)
Fragments: 35456364 total (35205597 tlen-paired, 3104 hash-paired, 373 singletons, 8719 discordant, 238571 orphans, 9814 too large [>5000 bp], 13317007 duplicates)
Reads: 66801607 total, 49581 skipped (flags/unmapped)
Fragments: 33484139 total (33232565 tlen-paired, 3117 hash-paired, 334 singletons, 12971 discordant, 235152 orphans, 9617 too large [>5000 bp], 12810767 duplicates)
Reads: 78747488 total, 69129 skipped (flags/unmapped)
Fragments: 39561183 total (38879862 tlen-paired, 1845 hash-paired, 339 singletons, 128835 discordant, 550302 orphans, 53317 too large [>5000 bp], 15202079 duplicates)
Reads: 78286944 total, 45072 skipped (flags/unmapped)
Fragments: 39245461 total (38949364 tlen-paired, 3019 hash-paired, 301 singletons, 12792 discordant, 279985 orphans, 15618 too large [>5000 bp], 15085441 duplicates)