Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_8F1-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_8F1-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_8F1-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_8F1-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 87261234 total, 61385 skipped (flags/unmapped)
Fragments: 43712202 total (43437851 tlen-paired, 4399 hash-paired, 395 singletons, 16449 discordant, 253108 orphans, 14474 too large [>5000 bp], 17086066 duplicates)
Reads: 93665939 total, 50773 skipped (flags/unmapped)
Fragments: 46926345 total (46653299 tlen-paired, 2745 hash-paired, 471 singletons, 12055 discordant, 257775 orphans, 10361 too large [>5000 bp], 18031122 duplicates)
Reads: 102578136 total, 83919 skipped (flags/unmapped)
Fragments: 51467197 total (50798257 tlen-paired, 2328 hash-paired, 381 singletons, 122757 discordant, 543474 orphans, 51839 too large [>5000 bp], 20284960 duplicates)
Reads: 102547884 total, 57810 skipped (flags/unmapped)
Fragments: 51378563 total (51038380 tlen-paired, 5087 hash-paired, 377 singletons, 16852 discordant, 317867 orphans, 25596 too large [>5000 bp], 20208909 duplicates)