Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 659_dm4-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.baiThe index file is older than the data file: 659_dm4-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 659_dm4-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
The index file is older than the data file: 659_dm4-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 96565987 total, 69077 skipped (flags/unmapped)
Fragments: 48394555 total (48045972 tlen-paired, 4711 hash-paired, 443 singletons, 20618 discordant, 322811 orphans, 15527 too large [>5000 bp], 18988776 duplicates)
Reads: 103600368 total, 60390 skipped (flags/unmapped)
Fragments: 51924349 total (51553701 tlen-paired, 4853 hash-paired, 430 singletons, 17499 discordant, 347866 orphans, 19788 too large [>5000 bp], 20525889 duplicates)
Reads: 104590235 total, 54258 skipped (flags/unmapped)
Fragments: 52418918 total (52073128 tlen-paired, 2312 hash-paired, 576 singletons, 14827 discordant, 328075 orphans, 13396 too large [>5000 bp], 20141785 duplicates)
Reads: 114008541 total, 96716 skipped (flags/unmapped)
Fragments: 57230480 total (56373956 tlen-paired, 4414 hash-paired, 415 singletons, 162247 discordant, 689448 orphans, 70364 too large [>5000 bp], 22651206 duplicates)