Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_81M-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_81M-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_81M-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_81M-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 81358279 total, 65065 skipped (flags/unmapped)
Fragments: 40789984 total (40458489 tlen-paired, 4629 hash-paired, 362 singletons, 14924 discordant, 311580 orphans, 12594 too large [>5000 bp], 16091802 duplicates)
Reads: 86682976 total, 52376 skipped (flags/unmapped)
Fragments: 43463257 total (43131861 tlen-paired, 2999 hash-paired, 502 singletons, 9997 discordant, 317898 orphans, 11243 too large [>5000 bp], 16748973 duplicates)
Reads: 95233023 total, 56046 skipped (flags/unmapped)
Fragments: 47754637 total (47358505 tlen-paired, 3064 hash-paired, 378 singletons, 14715 discordant, 377975 orphans, 23028 too large [>5000 bp], 18895889 duplicates)
Reads: 96016399 total, 86082 skipped (flags/unmapped)
Fragments: 48268742 total (47326192 tlen-paired, 3141 hash-paired, 446 singletons, 180786 discordant, 758177 orphans, 75728 too large [>5000 bp], 19078403 duplicates)