Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_5KC-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5KC-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5KC-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5KC-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 71226046 total, 54902 skipped (flags/unmapped)
Fragments: 35711473 total (35423659 tlen-paired, 3709 hash-paired, 444 singletons, 13231 discordant, 270430 orphans, 9536 too large [>5000 bp], 14197162 duplicates)
Reads: 75724490 total, 44205 skipped (flags/unmapped)
Fragments: 37968228 total (37682155 tlen-paired, 2094 hash-paired, 464 singletons, 9494 discordant, 274021 orphans, 9157 too large [>5000 bp], 14700421 duplicates)
Reads: 83830226 total, 49564 skipped (flags/unmapped)
Fragments: 42036201 total (41686400 tlen-paired, 2808 hash-paired, 360 singletons, 13525 discordant, 333108 orphans, 20864 too large [>5000 bp], 16735857 duplicates)
Reads: 84496180 total, 76280 skipped (flags/unmapped)
Fragments: 42469207 total (41661731 tlen-paired, 3345 hash-paired, 377 singletons, 154561 discordant, 649193 orphans, 65528 too large [>5000 bp], 16900171 duplicates)