Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 96196353 total, 69541 skipped (flags/unmapped)
Fragments: 48200747 total (47871008 tlen-paired, 3649 hash-paired, 396 singletons, 22594 discordant, 303100 orphans, 14407 too large [>5000 bp], 19247029 duplicates)
Reads: 103178834 total, 57580 skipped (flags/unmapped)
Fragments: 51698226 total (51379019 tlen-paired, 2923 hash-paired, 536 singletons, 15374 discordant, 300374 orphans, 12856 too large [>5000 bp], 20271017 duplicates)
Reads: 112530025 total, 89780 skipped (flags/unmapped)
Fragments: 56470581 total (55719627 tlen-paired, 3417 hash-paired, 432 singletons, 135088 discordant, 612017 orphans, 55766 too large [>5000 bp], 22789572 duplicates)
Reads: 112780640 total, 64463 skipped (flags/unmapped)
Fragments: 56509529 total (56122010 tlen-paired, 6368 hash-paired, 427 singletons, 22048 discordant, 358676 orphans, 28111 too large [>5000 bp], 22726417 duplicates)