Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1047_CJ-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_CJ-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_CJ-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_CJ-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 79284650 total, 53562 skipped (flags/unmapped)
Fragments: 39741936 total (39450231 tlen-paired, 5800 hash-paired, 361 singletons, 16859 discordant, 268685 orphans, 8131 too large [>5000 bp], 14415641 duplicates)
Reads: 79915580 total, 48580 skipped (flags/unmapped)
Fragments: 40057738 total (39772996 tlen-paired, 2813 hash-paired, 453 singletons, 14101 discordant, 267375 orphans, 9676 too large [>5000 bp], 14092531 duplicates)
Reads: 73963787 total, 57226 skipped (flags/unmapped)
Fragments: 37076221 total (36784950 tlen-paired, 3470 hash-paired, 374 singletons, 19770 discordant, 267657 orphans, 11075 too large [>5000 bp], 13345621 duplicates)
Reads: 86968157 total, 79131 skipped (flags/unmapped)
Fragments: 43659867 total (42995461 tlen-paired, 2674 hash-paired, 385 singletons, 123348 discordant, 537999 orphans, 53838 too large [>5000 bp], 15834496 duplicates)