Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BGBW-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_BGBW-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.baiThe index file is older than the data file: 1029_BGBW-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1029_BGBW-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 61839624 total, 42860 skipped (flags/unmapped)
Fragments: 30985594 total (30779806 tlen-paired, 2644 hash-paired, 300 singletons, 12802 discordant, 190042 orphans, 7959 too large [>5000 bp], 10837868 duplicates)
Reads: 66815262 total, 37840 skipped (flags/unmapped)
Fragments: 33481777 total (33249327 tlen-paired, 3056 hash-paired, 273 singletons, 11294 discordant, 217827 orphans, 15984 too large [>5000 bp], 11762536 duplicates)
Reads: 67258474 total, 36778 skipped (flags/unmapped)
Fragments: 33699232 total (33494422 tlen-paired, 2134 hash-paired, 372 singletons, 9314 discordant, 192990 orphans, 8297 too large [>5000 bp], 11538752 duplicates)
Reads: 73331738 total, 60652 skipped (flags/unmapped)
Fragments: 36792274 total (36306619 tlen-paired, 2472 hash-paired, 301 singletons, 91319 discordant, 391563 orphans, 39201 too large [>5000 bp], 12943292 duplicates)