Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_4VB-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4VB-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4VB-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4VB-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 90881919 total, 63423 skipped (flags/unmapped)
Fragments: 45582217 total (45185522 tlen-paired, 3703 hash-paired, 488 singletons, 18126 discordant, 374378 orphans, 14464 too large [>5000 bp], 18964690 duplicates)
Reads: 95904781 total, 54864 skipped (flags/unmapped)
Fragments: 48105367 total (47706346 tlen-paired, 3702 hash-paired, 550 singletons, 12348 discordant, 382421 orphans, 11077 too large [>5000 bp], 19693889 duplicates)
Reads: 107697773 total, 88499 skipped (flags/unmapped)
Fragments: 54171819 total (53036207 tlen-paired, 4161 hash-paired, 527 singletons, 217667 discordant, 913257 orphans, 89710 too large [>5000 bp], 22627845 duplicates)
Reads: 106628938 total, 59898 skipped (flags/unmapped)
Fragments: 53489631 total (53009539 tlen-paired, 4817 hash-paired, 423 singletons, 18563 discordant, 456289 orphans, 23245 too large [>5000 bp], 22348659 duplicates)