Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 659_cCU-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.baiThe index file is older than the data file: 659_cCU-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 659_cCU-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_cCU-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 93534214 total, 74536 skipped (flags/unmapped)
Fragments: 46901568 total (46506727 tlen-paired, 5779 hash-paired, 507 singletons, 15318 discordant, 373237 orphans, 15143 too large [>5000 bp], 17991564 duplicates)
Reads: 98967065 total, 63956 skipped (flags/unmapped)
Fragments: 49628789 total (49232297 tlen-paired, 4642 hash-paired, 658 singletons, 10375 discordant, 380817 orphans, 13503 too large [>5000 bp], 18791298 duplicates)
Reads: 108930500 total, 68906 skipped (flags/unmapped)
Fragments: 54630716 total (54156245 tlen-paired, 7290 hash-paired, 533 singletons, 15685 discordant, 450963 orphans, 25829 too large [>5000 bp], 21082153 duplicates)
Reads: 109655634 total, 112741 skipped (flags/unmapped)
Fragments: 55147405 total (53971136 tlen-paired, 5186 hash-paired, 569 singletons, 227458 discordant, 943056 orphans, 95854 too large [>5000 bp], 21233212 duplicates)