Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_QNH-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_QNH-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_QNH-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_QNH-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 103387498 total, 75724 skipped (flags/unmapped)
Fragments: 51929543 total (51328215 tlen-paired, 4786 hash-paired, 641 singletons, 20030 discordant, 575871 orphans, 14600 too large [>5000 bp], 20279419 duplicates)
Reads: 111334301 total, 66496 skipped (flags/unmapped)
Fragments: 55922850 total (55299024 tlen-paired, 4606 hash-paired, 643 singletons, 14509 discordant, 604068 orphans, 13408 too large [>5000 bp], 21316742 duplicates)
Reads: 108896287 total, 70521 skipped (flags/unmapped)
Fragments: 54698981 total (54033271 tlen-paired, 7948 hash-paired, 574 singletons, 18120 discordant, 639068 orphans, 33723 too large [>5000 bp], 21371536 duplicates)
Reads: 121448025 total, 119322 skipped (flags/unmapped)
Fragments: 61260766 total (59387965 tlen-paired, 3540 hash-paired, 658 singletons, 373206 discordant, 1495397 orphans, 151613 too large [>5000 bp], 23797876 duplicates)