Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_3IJ-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3IJ-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3IJ-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_3IJ-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 78144227 total, 58438 skipped (flags/unmapped)
Fragments: 39187307 total (38844952 tlen-paired, 4312 hash-paired, 507 singletons, 13882 discordant, 323654 orphans, 17668 too large [>5000 bp], 13443949 duplicates)
Reads: 81991949 total, 46507 skipped (flags/unmapped)
Fragments: 41127605 total (40786148 tlen-paired, 3866 hash-paired, 463 singletons, 9223 discordant, 327905 orphans, 9300 too large [>5000 bp], 13868340 duplicates)
Reads: 89632810 total, 51130 skipped (flags/unmapped)
Fragments: 44962166 total (44560098 tlen-paired, 3660 hash-paired, 404 singletons, 13890 discordant, 384114 orphans, 20933 too large [>5000 bp], 15469542 duplicates)
Reads: 90646239 total, 89204 skipped (flags/unmapped)
Fragments: 45597563 total (44598267 tlen-paired, 4300 hash-paired, 396 singletons, 191745 discordant, 802855 orphans, 82580 too large [>5000 bp], 15635179 duplicates)