Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_ejY-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_ejY-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_ejY-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_ejY-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 48842828 total, 42190 skipped (flags/unmapped)
Fragments: 24494331 total (24279264 tlen-paired, 2507 hash-paired, 318 singletons, 7994 discordant, 204248 orphans, 8271 too large [>5000 bp], 8835978 duplicates)
Reads: 51997151 total, 34715 skipped (flags/unmapped)
Fragments: 26081025 total (25861108 tlen-paired, 2477 hash-paired, 305 singletons, 5098 discordant, 212037 orphans, 6364 too large [>5000 bp], 9242693 duplicates)
Reads: 56924567 total, 39465 skipped (flags/unmapped)
Fragments: 28551826 total (28288459 tlen-paired, 4641 hash-paired, 245 singletons, 7862 discordant, 250619 orphans, 16157 too large [>5000 bp], 10319421 duplicates)
Reads: 57950527 total, 68122 skipped (flags/unmapped)
Fragments: 29151114 total (28484881 tlen-paired, 4076 hash-paired, 280 singletons, 129938 discordant, 531939 orphans, 56198 too large [>5000 bp], 10460616 duplicates)