Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_dYT-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_dYT-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_dYT-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_dYT-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 101207789 total, 78778 skipped (flags/unmapped)
Fragments: 50773920 total (50309581 tlen-paired, 4627 hash-paired, 554 singletons, 16839 discordant, 442319 orphans, 12022 too large [>5000 bp], 20145555 duplicates)
Reads: 108388535 total, 65776 skipped (flags/unmapped)
Fragments: 54378337 total (53900831 tlen-paired, 4264 hash-paired, 732 singletons, 12223 discordant, 460287 orphans, 13552 too large [>5000 bp], 21221296 duplicates)
Reads: 107378653 total, 70924 skipped (flags/unmapped)
Fragments: 53879458 total (53340505 tlen-paired, 6101 hash-paired, 592 singletons, 15149 discordant, 517111 orphans, 33258 too large [>5000 bp], 21437267 duplicates)
Reads: 118782460 total, 127223 skipped (flags/unmapped)
Fragments: 59772131 total (58371953 tlen-paired, 4877 hash-paired, 606 singletons, 275298 discordant, 1119397 orphans, 115489 too large [>5000 bp], 23732348 duplicates)