Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_CLD-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_CLD-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_CLD-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_CLD-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 89094971 total, 69554 skipped (flags/unmapped)
Fragments: 44704605 total (44276626 tlen-paired, 4909 hash-paired, 555 singletons, 16353 discordant, 406162 orphans, 11462 too large [>5000 bp], 16605983 duplicates)
Reads: 95193904 total, 59977 skipped (flags/unmapped)
Fragments: 47764647 total (47329972 tlen-paired, 4267 hash-paired, 664 singletons, 10865 discordant, 418879 orphans, 12088 too large [>5000 bp], 17523139 duplicates)
Reads: 104015703 total, 64877 skipped (flags/unmapped)
Fragments: 52192627 total (51691073 tlen-paired, 6907 hash-paired, 527 singletons, 16261 discordant, 477859 orphans, 21979 too large [>5000 bp], 19484092 duplicates)
Reads: 105226708 total, 110577 skipped (flags/unmapped)
Fragments: 52974090 total (51676523 tlen-paired, 4217 hash-paired, 548 singletons, 252293 discordant, 1040509 orphans, 104504 too large [>5000 bp], 19692845 duplicates)