Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_ZNP-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_ZNP-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_ZNP-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_ZNP-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 109043116 total, 83145 skipped (flags/unmapped)
Fragments: 54641949 total (54269646 tlen-paired, 6333 hash-paired, 698 singletons, 12423 discordant, 352849 orphans, 14810 too large [>5000 bp], 20701502 duplicates)
Reads: 116676642 total, 71689 skipped (flags/unmapped)
Fragments: 58482905 total (58055732 tlen-paired, 9134 hash-paired, 520 singletons, 11152 discordant, 406367 orphans, 23015 too large [>5000 bp], 22126997 duplicates)
Reads: 123195558 total, 71380 skipped (flags/unmapped)
Fragments: 61755971 total (61320488 tlen-paired, 5743 hash-paired, 748 singletons, 10100 discordant, 418892 orphans, 15938 too large [>5000 bp], 23081159 duplicates)
Reads: 127872965 total, 132191 skipped (flags/unmapped)
Fragments: 64251348 total (63059920 tlen-paired, 5349 hash-paired, 565 singletons, 239735 discordant, 945779 orphans, 92211 too large [>5000 bp], 24216494 duplicates)