Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_58F-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_58F-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_58F-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_58F-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 110969461 total, 83381 skipped (flags/unmapped)
Fragments: 55667641 total (55164693 tlen-paired, 6352 hash-paired, 651 singletons, 18612 discordant, 477333 orphans, 14391 too large [>5000 bp], 20922274 duplicates)
Reads: 117071744 total, 70991 skipped (flags/unmapped)
Fragments: 58738272 total (58178246 tlen-paired, 6242 hash-paired, 607 singletons, 15937 discordant, 537240 orphans, 31028 too large [>5000 bp], 22213970 duplicates)
Reads: 119205181 total, 65369 skipped (flags/unmapped)
Fragments: 59808255 total (59286911 tlen-paired, 4241 hash-paired, 663 singletons, 12795 discordant, 503645 orphans, 13805 too large [>5000 bp], 22192186 duplicates)
Reads: 129464615 total, 116852 skipped (flags/unmapped)
Fragments: 65158389 total (63632212 tlen-paired, 4474 hash-paired, 614 singletons, 300642 discordant, 1220447 orphans, 126023 too large [>5000 bp], 24565572 duplicates)