Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_RNH-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_RNH-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_RNH-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_RNH-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 69154097 total, 54339 skipped (flags/unmapped)
Fragments: 34714976 total (34345143 tlen-paired, 3574 hash-paired, 411 singletons, 12003 discordant, 353845 orphans, 12031 too large [>5000 bp], 11832124 duplicates)
Reads: 73610772 total, 44478 skipped (flags/unmapped)
Fragments: 36957880 total (36579573 tlen-paired, 2689 hash-paired, 426 singletons, 8560 discordant, 366632 orphans, 8796 too large [>5000 bp], 12356072 duplicates)
Reads: 80782243 total, 83379 skipped (flags/unmapped)
Fragments: 40722230 total (39557513 tlen-paired, 3051 hash-paired, 444 singletons, 225668 discordant, 935554 orphans, 95201 too large [>5000 bp], 13827092 duplicates)
Reads: 79847393 total, 48241 skipped (flags/unmapped)
Fragments: 40091075 total (39653554 tlen-paired, 3354 hash-paired, 394 singletons, 11993 discordant, 421780 orphans, 19588 too large [>5000 bp], 13680742 duplicates)