Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_4FT-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4FT-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4FT-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4FT-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 73328636 total, 53840 skipped (flags/unmapped)
Fragments: 36795996 total (36445070 tlen-paired, 3559 hash-paired, 433 singletons, 13777 discordant, 333157 orphans, 8197 too large [>5000 bp], 13345299 duplicates)
Reads: 77267236 total, 47770 skipped (flags/unmapped)
Fragments: 38774149 total (38389956 tlen-paired, 2917 hash-paired, 413 singletons, 12118 discordant, 368745 orphans, 20163 too large [>5000 bp], 14084454 duplicates)
Reads: 77594333 total, 47901 skipped (flags/unmapped)
Fragments: 38933630 total (38578510 tlen-paired, 3021 hash-paired, 532 singletons, 9825 discordant, 341742 orphans, 10723 too large [>5000 bp], 13785949 duplicates)
Reads: 85290799 total, 84120 skipped (flags/unmapped)
Fragments: 42929886 total (41898607 tlen-paired, 3184 hash-paired, 450 singletons, 201886 discordant, 825759 orphans, 86558 too large [>5000 bp], 15542078 duplicates)